Tags

0.7.1

Dependency housekeeping to improve co-installability with common scientific Python packages (cobra, cvxpy, etc.).

  - pandas: loosen floor from >=2.3 to >=2.0, allowing co-installation with cobra which requires pandas<3.0 — pip will resolve to the latest pandas 2.x satisfying both constraints
  - scipy: tighten floor from >=1.12 to >=1.13, aligning with cvxpy's requirement
  - pyarrow: removed — was never imported in the codebase; pandas only requires it optionally for parquet/feather extras
  - pint: switch to pint[uncertainties] to explicitly pull in the uncertainties package needed for Measurement objects (.plus_minus()), which pint only installs on request

No API or behavioural changes.

0.7.1b1

Replacing Levenshtein with rapidfuzz and adding pre-filtering to speed up searching by compound names: CompoundCache.search().
The speedup is roughly x4 times faster on average.

0.7.0

A more future-proof version (requiring python >=3.11) with updated dependencies.

0.7.0b2

minor changes to get rid of some warnings (for python 3.14)

0.7.0b1

beta version with python 3.14 support (while dropping 3.9 and 3.10)

0.6.2

Minor update:
- Refreshing dependency versions
- Supporting Python 3.13

0.6.1

Minor update:
- Refreshing dependency versions
- removing `setup.py` now that we use `pyproject.toml`
- updating `setuptools-git-versioner` dependency to `>=2.0,<3`

0.6.0

New release with:
- fixing Pandas version conflict but upgrading to SQLAlchemy 2.0
- using Pooch for Zenodo file handling and caching
- many other small bug fixes

0.6.0b2

migrating to SQLAlchemy 2.0 (and solving conflicts with pandas 2.2)

0.6.0b1

0.5.5b1

A beta version for testing the new Pooch-based code for Zenodo file-handling.

0.5.4

Supporting python 3.9-3.12

0.5.2

releasing the Zenodo patch

0.5.2b1

patching Zenodo download code after their REST API update

0.5.1

downgrading periodictable dependency to 1.5 (for conda)

0.5.0

Release 0.5 includes:
- many behind the scenes updates to version dependencies and code standards
- new features such as pH sensitivity calculations
- support for python 3.9-3.11
- many more minor updates

0.5.0b2

- relaxing version dependencies for Pandas and Numpy, to allow installing cobrapy

0.5.0b1

- preparing for 0.5.0 release
- fixing bug in element table function
- updating development tool versions (tox, isort, black)

0.4.6

- fixing requirement to have 'Content-Length' in the HTTP header when downloading from zenodo

0.4.5

- reverting to old DB (same as all previous release versions).
- adding methods for calculating the pH sensitivity